Publications 2001 – 2009

 

2001:

 

Huber, C. G., Choudhary, G., Horváth, C.*

Capillary Electrochromatography with Gradient Elution.

Analytical Chemistry, 69 (1997) 4429-4436.

 

 

Huber, C. G.*, Kleindienst, G., Bonn, G. K. (1997).

Application of Micropellicular Poly-styrene/divinylbenzene Stationary Phases for High-Performance Liquid Chromatography Electrospray-Mass Spectrometry of Proteins and Peptides.

Chromatographia, 44 (1997) 438-448.

 

 

 

2002:

 

Zolla, L.*, Rinalducci, S., Timperio, A.-M., Huber, C. G.

Proteomics of Light-Harvesting Proteins in Different Plant Species: Analysis and Comparison by Liquid Chromatography-Electrospray Ionization Mass Spectrometry. Photosystem I.

Plant Physiology 130 (2002) 1938-1950.

 

 

Oberacher, H., Huber, C. G., Oefner, P. J.*

Mutation Sreening by Ion-Pair Reversed-Phase High-Performance Liquid Chromatography – Electrospray Ionization Mass Spectrometry (ICEMS).

Human Mutation, 21 (2002) 86-95.

 

 

Mayr, B., Hölzl., G., Eder, K., Buchmeiser, M. R.*, Huber, C. G.*

Hydrophobic, Pellicular, Monolithic Capillary Columns Based on Crosslinked Polynorbornene for Biopolymer Separations.

Analytical Chemistry 74, (2002) 6080-6087.

 

 

Premstaller, A., Oefner, P. J. *, Oberacher, H., Huber, C. G.

Capillary Array High-Performance Liquid Chromatography of Nucleic Acids and Proteins.

Analytical Chemistry, 74 (2002) 4688-4693.

 

 

Oefner, P. J.*, Huber, C. G.

A Decade of High Resolution Liquid Chromatography of Nucleic Acids on Styrene-Divinylbenzene Copolymers

Review in Journal of Chromatography B, 782 (2002) 27-55.

 

 

Walcher, W., Oberacher, H., Troiani, S., Hölzl, G., Oefner, P. J., Zolla, L., Huber, C. G.*

Monolithic Capillary Columns for Liquid Chromatography-Electrospray Ionization Mass Spectrometry in Proteomic and Genomic Research.

Journal of Chromatography B, 782 (2002) 111-125.

 

 

Berger, B., Hölzl, G., Oberacher, H., Niederstätter, H., Huber, C. G., Parson, W.*

SNP Genotyping by On-Line Liquid Chromatography-Mass Spectrometry in Forensic Science with the Y-chromosomal Locus M9.

Journal of Chromatography B, 782 (2002) 89-97.

 

 

Oberacher, H., Oefner, P. J., Hölzl, G., Premstaller, A., Davis, K., Huber, C. G.*

Re-Sequencing of Multiple Single Nucleotide Polymorphisms by Liquid Chromatography-Electrospray Ionization Mass Spectrometry.

Nucleic Acids Research 30 (2002) e67.

 

 

Lubbad, S., Mayr, B., Huber, C. G.*, Buchmeiser, M. R.*

Micropreparative Fractionation of DNA Fragments on Metathesis-Based Monoliths: Influence of Stoichiometry on Separation.

Journal of Chromatography A, 959 (2002) 121-129.

 

 

Premstaller, A., Oberacher, H., Rickert, A., Huber, C. G., Oefner, P. J.*

Multiplex Analysis of Single-Nucleotide Extension Products on a 16-Capillary Denaturing High-Performance Chromatography Array.

Genomics, 79 (2002) 793-798.

 

 

Oberacher, H., Huber, C. G.*

Capillary Monoliths for the Analysis of Nucleic Acids by High-Performance Liquid Chromatography-Electrospray Ionization Mass Spectrometry.

Trends in Analytical Chemistry, 21 (2002) 166-174.

 

 

Kirchmair, M.*, Pöder, R., Huber, C. G., Miller, O. K.

Chemotaxonomical and Morphological Observations in the Genus Omphalotus Fayod.

Persoonia, 17 (2002) 583-600.

 

 

Oberacher, H., Wellenzohn, B., Huber, C. G.*

Comparative Sequencing of Nucleic Acids by Tandem Mass Spectrometry.

Analytical Chemistry, 74 (2002) 211-218.

 

 

 

2003:

 

Huber, C. G.*, Krajete, A.

Analysis of Nucleic Acids by Capillary Ion-Pair Chromatography Coupled to Negative-Ion Electrospray Mass Spectrometry.

Analytical Chemistry, 71 (1999) 3730-3739.

 

 

Huber, C. G.*, Premstaller, A., Kleindienst, G.

Evaluation of volatile eluents and electrolytes for high-performance liquid chromatography-electrospray ionization mass spectrometry and capillary electrophoresis-electrospray ionization mass spectrometry of proteins.

Part 2: Capillary electrophoresis.

Journal of Chromatography A, 849 (1999) 175-189.

 

 

Huber, C. G.*, Premstaller, A.

Evaluation of volatile eluents and electrolytes for high-performance liquid chromatography-electrospray ionization mass spectrometry and capillary electrophoresis-electrospray ionization mass spectrometry of proteins.

Part 1: Liquid chromatography.

Journal of Chromatography A, 849 (1999) 161-173.

 

 

Huck, C. W.*, Huber, C. G., Lagoja, I. M., Ongania, K.-H., Scherz, H., Bonn, G. K., Popp, M.

3´-4´,5´-Trimethoxyflavone from Flos Primulae Veris.

Planta Medica, 65 (1999) 491.

 

 

Pichler, A., Rüdisser, S., Mitterböck, M., Huber, C. G., Winger, R. H., Liedl, K. R., Hallbrucker, A., Mayer, E.*

Unexpected BII Conformer Substrate Population in Unoriented Hydrated Films of the d(CGCGAATTCGCG)2 Dodecamer and of Native B-DNA from Salmon Testes.

Biophysical Journal, 77 (1999) 398-409.

 

 

Bachmair, F., Huber, C. G., Daxenbichler, G.*

Quantitation of Gene Expression by Means of HPLC Analysis of RT/PCR Products.

Clinica Chimica Acta, 279 (1999) 25-34.

 

 

Kirchmair, M., Huber, C. G.*, Pöder, R.

Identification of illudins in Omphalotus nidiformis and Omphalotus olivascens var. indigo by column liquid chromatography-atmospheric pressure chemical ionization tandem mass spectrometry

Journal of Chromatography A, 832 (1999) 247-252.

 

 

 

2004:

 

Niederstätter, H., Berger, B., Oberacher, H., Brandstätter, A., Huber, C. G., Parson, W.*

Separate Analysis of DYS385a and b versus Conventional DYS385 Typing: Is There Forensic Relevance?

International Journal of Legal Medicine, 119 (2004) 1-9.

 

 

Oberacher, H., Hölzl, G., Oefner, P. J., Parson, W., Huber, C. G.*

Optimized Suppression of Adducts from Polymerase Chain Reaction Products for Semi-Quantitative SNP Genotyping by Liquid Chromatography-Mass Spectrometry

Journal of the American Society for Mass Spectrometry, 15 (2004) 1897-1906.

 

 

Huber, C. G.*, Walcher, W., Troiani, S., Poceddu, E., Timperio, A.-M., Zolla, L.*

Multidimensional Proteomic Analysis of Photosynthetic Membrane Proteins by Liquid Extraction-Ultracentrifugation-Liquid Chromatography-Mass Spectrometry.

Proteomics, 4 (2004) 3909-3920.

 

 

Walcher, W., Toll, H., Huber, C. G.*

Operational Variables in Reversed-Phase HPLC-ESI-MS of Peptides and Proteins Using Poly-(Styrene-Divinylbenzene) Monoliths.

Journal of Chromatography A, 1053 (2004) 107-117.

 

 

Zolla, L.*, Timperio, A. M., Huber, C. G.*

Thylakoid Membrane Proteome: Separation by HPLC and Identification by Accurate Mass Determinations.

Eingeladener Review bei: Current Proteomics, 1 (2004) 247-260.

 

 

Timperio, A. M., Huber, C. G., Zolla, L.*

Separation and identification of the light harvesting proteins contained in grana and stroma thylakoid membrane fractions.

Journal of Chromatography A, 1040 (2004) 73-81.

 

 

Zolla, L.*, Rinalducci, S., Timperio, A. M., Huber, C. G., Righetti, P. G.

Intact Molecular Mass Measurements for Unequivocal Identification of Hydrophobic Photosynthetic Photosystems I and PSII Antenna Proteins.

Electrophoresis, 25 (2004) 1353-1366.

 

 

Oberacher, H., Mayr, B. M., Parson, W., Oefner, P. J., Huber, C. G.*

Applicability of Tandem Mass Spectrometry to the Automated Sequencing of Long-Chain Oligonucleotides.

Journal of the American Society of Mass Spectrometry, 15 (2004) 510-522.

 

 

Zolla, L.*, Rinalducci, S., Timperio, A. M., Huber, C. G.*

Separation and identification of thylakoid membrane proteins.

European Journal of Mass Spectrometry, 10 (2004) 321-333.

 

 

Oberacher, H., Premstaller, A., Huber, C. G.*

Characterization of Some Physical and Chromatographic Properties of Monolithic Poly-(styrene-co-divinylbenzene) Columns.

Journal of Chromatography A, 1030 (2004) 201-208.

 

 

Oberacher, H.*, Mayr, B. M., Huber, C. G.

Automated de-novo Sequencing of Nucleic Acids by Liquid Chromatography-Tandem Mass Spectrometry.

Journal of the American Chemical Society for Mass Spectrometry, 15 (2004) 32-42.

 

 

 

2005:

 

Gröpl, C., Lange, E., Reinert, K., Kohlbacher, O., Sturm, M., Huber, C. G., Mayr, B. M., Klein, C. L.

Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomic Samples.

Lecture Notes in Computer Science, 3695 (2005) 151-162.

 

 

Toll, H., Wintringer, R. Schweiger-Hufnagel, U., Huber, C. G.*

Comparing monolithic and microparticular capillary columns for the separation and analysis of peptide mixtures by liquid chromatography-mass spectrometry.

Journal of Separation Science 28 (2005) 1666-1674.

 

 

Tholey, A., Toll, H., Huber, C. G.

Separation and Detection of Phosphorylated and Non-Phosphorylated Peptides in Liquid Chromatography-Mass spectrometry Using Monolithic Columns and Acidic or Alkaline Mobile Phases.

Analytical Chemistry, 77 (2005) 4618-4625.

 

 

Vigassy, T., Huber, C. G, Wintringer, R., Pretsch, E.*

Monolithic Capillary-Based Ion-Selective Electrodes: Improved Detection Limits and Response Times.

Analytical Chemistry, 77 (2005) 3966-3970.

 

 

Mayr, B. M., Kobold, U., Moczko, M, Nyeki, A., Koch, T.*, Huber, C. G.*

Identification of Bacteria by Polymerase Chain Reaction Followed by Liquid Chromatography-Mass Spectrometry.

Analytical Chemistry, 77 (2005) 4563-4570.

 

 

Toll, H., Oberacher, H., Swart, R., Huber, C. G.*

Separation, Detection and Identification of Peptides by Ion-Pair Reversed-Phase High-Performance Liquid Chromatography-Electrospray Ionization Mass Spectrometry at High and Low pH

Journal of Chromatography A, 1079 (2005) 274-286.

 

 

Hölzl, G., Oberacher, H., Pitsch, S., Stutz, A., Huber, C. G.*

Analysis of Synthetic and Biological RNA by Liquid Chromatography-Mass Spectrometry Using Monolithic Columns.

Analytical Chemistry, 77 (2005) 673-680.

 

 

 

2006:

 

Schley, C., Swart, R., Huber, C. G*

Capillary Scale Monolithic Trap Column for Desalting and Preconcentration of Peptides and Proteins in One- and Two-dimensional Separations.

Journal of Chromatography A, 1136 (2006) 210-220.

 

 

Schley, C., Altmeyer, M., Swart, R., Müller, R., Huber, C. G.*

Proteome analysis of Myxococcus xanthus by Off-line Two-Dimensional Separation Using Monolithic Poly-(styrene-divinylbenzene) Columns Combined with Ion-Trap Tandem Mass Spectrometry.

Journal of Proteome Research, 5 (2006) 2760-2768.

 

 

Kohlbacher, O., Quinten, S., Sturm, M., Mayr, B. M., Huber, C. G.*

Struktur-Aktivitäts-Beziehungen in der Chromatographie: Retentionsvorhersage von Oligonukleotiden mit Supportvektorregression.

Angewandte Chemie 118 (2006) 7166 –7169.

 

 

Structure-activity relationships in chromatography: retention prediction of oligonucleotides with support vector regression.

Angewandte Chemie, International Edition 45 (2006) 7009-7012.

 

 

Yoo, C., Zhao, J. Pal, M., Hersberger, K. Huber, C. G., Simeone, D. M. Beer, D. G., Lubman, D. M.*

Automated Integration of Monolith-based Protein Separation with On-Plate Digestion for Mass Spectrometric Analysis of Esophageal Adenocarcinoma Human Epithelial Samples.

Electrophoresis, 27 (2006) 3643-3651.

 

 

Zheng, S., Yoo, Delmotte, N., C., Miller, F. R., Huber, C. G., Lubman, D. M.*

Monolithic Column HPLC Separation of Intact Proteins Analyzed by LC-MALDI Using On-Plate Digestion: A New Approach to Integrate Protein Separation and Identification.

Analytical Chemistry, 78 (2006) 5198-5204.

 

 

Toll, H., Berger, P.*, Hofmann, A., Hildebrand, A., Lenhof, H. P., Huber, C. G.*

Glycosylation Patterns of Human Chorionic Gonadotropin (hCG) Revealed by Liquid Chromatography-Mass Spectrometry and Bioinformatics.

Electrophoresis, 27 (2006) 2734-2746.

 

 

Yoo, C., Pal, M., Miller, F. R., Barder, T. J., Huber, C. G., Lubman, D. M.*

Toward High Sequence Coverage of Proteins in Human Breast Cancer Cells Using On-Line Monolith-Based HPLC-ESI-TOF MS and MALDI-TOF MS Compared to CE-MS.

Electrophoresis, 27 (2006) 2126-2138.

 

 

Svec, F.*, Huber, C. G.

Monolithic Materials: Promises, Challenges, Achievements

Eingeladener Beitrag für Analytical Chemistry, 78 (2006) 2100-2107 (Coverstory).

 

 

Oberacher, H.*, Niederstätter, H., Huber, C. G., Parson, W.

Accurate Determination of Allelic Frequencies in Mitochondrial DNA Mixtures by Electrospray Ionization Time-of-Flight Mass Spectrometry

Analytical and Bioanalytical Chemistry, 384 (2006)1155-1163.

 

 

Mayr, B. M., Kohlbacher, O., Reinert, K., Sturm, M., Gröpl, C., Lange, E., Klein, C., Huber, C. G.*

Absolute Myoglobin Quantitation in Serum by Combining Two-Dimensional Liquid Chromatography-Electrospray Ionization Mass Spectrometry and Novel Data Analysis Algorithms.

Journal of Proteome Research, 5 (2006) 414-421.

 

 

 

2007:

 

Rajcevic, U., Hudler, P., Mijovski, G., Gorjanc, G., Hoelzl, G., Repse, S., Juvan, R., Kovac, M., Huber, C. G., Komel, R.

Assessment of differential expression of oncogenes in adenocarcinoma of stomach with fluorescent labeling and simultaneous amplification of gene transcripts.

Radiol Oncol 41 (2007) 174-182

 

 

Pfeifer, N.*, Leinenbach, A., Huber, C. G., Kohlbacher, O.

Statistical learning of peptide retention behavior in chromatographic separations: A new kernel-based approach for computational proteomics.

BMC Bioinformatics, 8 (2007) 468.

 

 

Delmotte, N., Lasaosa, M., Tholey, A., Heinzle, E., Huber, C. G.*

Two-dimensional reversed-phase x ion-pair reversed-phase HPLC: an alternative approach to high-resolution peptide separation for shotgun proteome analysis.

Journal of Proteome Research 6 (2007) 4363-4373.

 

 

Delmotte, N., Kobold, U., Meier, T., Gallusser, A., Strancar, A., Huber, C. G.*

Miniaturized monolithic disks for immunoadsorption of cardiac biomarkers from serum.

Analytical and Bioanalytical Chemistry, 389 (2007) 1065-1074.

 

 

Eder, K., Huber, C. G., Buchmeiser, M. R.*

Surface-Functionalized, Ring-Opening Metathesis Polymerization Derived Monoliths for Anion-Exchange Chromatography.

Macromolecular Rapid Communications 28 (2007) 2029–2032.

 

 

Lange, E.*, Gröpl, C., Schulz-Trieglaff, O., Leinenbach, A., Huber, C. G., Reinert, K.

A Geometric Approach fort he Alignment of Liquid Chromatography-Mass Spectrometry Data.

Bioinformatics, 23 (2007) i273-i281.

 

 

Steiner, F., Mahsunah, A., Arnold, F., Piecha, T., Huber, C. G.*

Automated Semipreparative Purification with Mass Spectrometric Fraction Collection Trigger: Modeling and Experimental Evaluation of a Setup Employing Passive Splitting.

Journal of Separation Science, 30 (2007) 1496-1508.

 

 

Sturm, M.*, Quinten, S., Huber, C. G., Kohlbacher, O.

A Statistical Learning Approach to the Modeling of Chromatographic Retention of Oligonucleotides Incorporating Sequence and Secondary Structure Data.

Nucleic Acids Research, 35 (2007) 4195-4202.

 

 

Yoo, C., Patwa, T., Kreunin, P., Miller, F. R., Huber, C. G., Nesvizhskii, A. I, Lubman, D. L.*

Comprehensive Analysis of Proteins of pH Fractionated Samples Using Monolithic LC/MS/MS, Intact MW Measurement and MALDI-QIT-TOF-MS.

Journal of Mass Spectrometry, 42 (2007) 312-334.

 

 

 

2008:

 

Schulz-Tieglaff, O.*, Hussong, R., Gröpl, C., Leinenbach, A., Hildebrandt, A., Huber, C. G., Reinert, K.

Computational Quantification of Peptides from LC-MS Data.

J. Computat. Biol., 15 (2008) 685-704.

 

 

Gostomski, I., Braun, R., Huber, C. G.*

Detection of Low-Abundant Impurities in Synthetic Thyroid Hormones by Stationary Phase-Optimized Liquid Chromatography-Mass Spectrometry.

Analytical and Bioanalytical Chemistry, 391 (2008) 279-288.

 

 

 

2009:

 

Lasaosa, M., Jakoby, T., Delmotte, N., Huber, C. G., Heinzle, E., Tholey, A.*

Rapid Selection of Peptide Containing Fractions in Off-Line 2-D HPLC in Shotgun Proteome Analysis by Sreeining with MALDI TOF MS.

Proteomics 9 (2009) 1-5.

 

 

Melchior, K., Tholey, A., Heisel, S., Keller, A., Lenhof, H.-P., Meese, E., Huber, C. G.*

Proteomic Study of Human Glioblastoma Multiforme Tissue Employing Complementary Two-Dimensional Liquid Chromatography- and Mass Spectrometry-Based Approaches.

Journal of Proteome Research 8 (2009) 4604-4614.

 

 

Leinenbach, A., Hartmer, R., Lubeck, M., Kneissl, B., Elnakady, Y. A., Bässmann, C., Müller, R., Huber, C. G.*

Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.

Journal of Proteome Research 8 (2009) 4350-4361.

 

 

Pfeifer, N., Leinenbach, A., Huber, C. G.*, Kohlbacher, O.

Improving Peptide Identication in Proteome Analysis by a Two-Dimensional Retention Time Filtering Approach.

Journal of Proteome Research 8 (2009)4109-4115.

 

 

Wörner, M. Melchior, K., Delmotte, N., Hwang, K. H., Monostory, K., Huber, C. G., Bernhardt, R.*

Shotgun proteomic analysis of the microsomal fraction of eukaryotic cells using a two-dimensional reversed-phase x ion-pair reversed-phase HPLC setup.

Journal of Separation Science, 32 (2009) 1165-1174.

 

 

Delmotte, N., Lasaosa, M., Tholey, A., Heinzle, E., Van Dorsselaer, A., Huber, C. G.*

Repeatability of off-line two-dimensional chromatographic separations and peptide identifications for shotgun proteome analysis.

Journal of Separation Science, 32 (2009) 1156-1164.

 

 

Lasaosa, M., Delmotte, N., Huber, C. G., Melchior, K., Heinzle, E., Tholey, A.*

A two-dimensional reversed-phase x ion-pair reversed phase HPLC MALDI-TOF/TOF MS approach for shotgun proteome analysis.

Analytical and Bioanalytical Chemistry, 393 (2008) 1245-1256.